FastQCFastQC Report
Wed 8 May 2024
EGAF00006128483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences361638
Total Bases52.2 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN11500.31799755556661635No Hit
CTCATCTTCTGCCTCTCCATTTCCTTGCTTGCTATAGTTCAGTCCCTCTA7000.19356372947533168No Hit
TGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTT4530.1252633849318932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)