FastQCFastQC Report
Wed 8 May 2024
EGAF00006128507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences252474
Total Bases37.2 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCCTTGCTTTCTATACCTCAGCCCTTCTA5830.23091486648130105No Hit
CTCATCTTCTGCCTCTCCATTTCGTTGCTTTCTATACTTCAGCCCCTCTA5270.20873436472666493No Hit
CTCATCTTCTGCCTCTCCATTTCCTTACTTTCTATACATCAGCCCCTCTA4720.18694994336050444No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3170.12555748314677947No Hit
CCAGGTACATCAGATCCATCAGGTCCGAGCTGTGTTGACTACCACTGCTT2540.10060441867281383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)