FastQCFastQC Report
Wed 8 May 2024
EGAF00006128509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences329130
Total Bases48.2 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCGTTGCTTTCTATACTTCAGCCCCTCTA15990.4858262692553094No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN7230.21967003919423936No Hit
CCAGGTACATCAGATCCATCAGGTCTGAGCTGTGTTGACTACCACTACTT4350.13216662109196972No Hit
GGCAGACAGTGTGACAAAGAGGCTGGTGTAGGAGAAGAGGGATCAGGACG4170.1266976574605779No Hit
TGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTT3370.10239115243216967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)