FastQCFastQC Report
Wed 8 May 2024
EGAF00006128513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences313358
Total Bases46.2 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCCTTGCTTTCTATACATCAGCCCCTCTA10460.333803509085455No Hit
TGTCAAGTGGGAAATGAATGCTCTTACAAGGCTCAAACTTGTGAACACAT4460.14232922089112135No Hit
GCATTTCCTTGCTTGCTCACTTCAGTCCCTCTAGCCTTCTTTCTGTCCCT4250.13562762080431967No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4250.13562762080431967No Hit
AGACATGCACACACCAGAGAAGATTCCAATTTAATGTCCTCCCTTTATTC3270.10435348706591184No Hit
TGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTT3160.10084312511568239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)