FastQCFastQC Report
Sat 6 Aug 2022
EGAF00006128513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences313358
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCCTTGCTTTCTATACATCAGCCCCTCTA10420.33252701383082606No Hit
TGTCAAGTGGGAAATGAATGCTCTTACAAGGCTCAAACTTGTGAACACAT4440.1416909732638069No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4250.13562762080431967No Hit
GCATTTCCTTGCTTGCTCACTTCAGTCCCTCTAGCCTTCTTTCTGTCCCT4200.13403200173603355No Hit
AGACATGCACACACCAGAGAAGATTCCAATTTAATGTCCTCCCTTTATTC3240.10339611562494015No Hit
TGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTT3150.10052400130202517No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)