FastQCFastQC Report
Wed 8 May 2024
EGAF00006128517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences371883
Total Bases51.1 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN28450.7650255591140225No Hit
TGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTT5680.15273621004455704No Hit
CTCATCTTCTGCCTCTCCATTTCCTTGCTTGCTATAGTTCAGTCCCTCTA4990.1341819873454823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)