FastQCFastQC Report
Wed 8 May 2024
EGAF00006128529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences222552
Total Bases32.8 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCCTTGCTTTCTATACGTCAGCCTTTCTA4390.19725727021100686No Hit
CTCATCTTCTGCCTCTCCATTTCGTTGCTTTCTATACTTCAGCCCCTCTA3960.1779359430604982No Hit
CTCATCTTCTGCCTCTCCATTTCCTTACTTTCTATACGTCAGCCCCTCTA3520.15816528272044286No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2440.1096372982493979No Hit
CCAGGTACATCAGATCCATCAGGTCCGAGCTGTGTTGACTACCACTGCTT2380.10694129911211761No Hit
CCAGGTACATCAGATCCATCAGGTCTGAGCTGTGTTGACTACCACTACTT2370.1064919659225709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)