FastQCFastQC Report
Wed 8 May 2024
EGAF00006128541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences272551
Total Bases39.8 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCTTCTGCCTCTCCATTTCCTTGCTTTCTATACCTCAGCCCTTCTA8800.3228753517690267No Hit
CTCATCTTCTGCCTCTCCATTTCCTTACTTTCTATACATCAGCCCCTCTA6600.24215651382677003No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4910.18014977013476377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)