FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006128618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145409145
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCCGA221450.017.0327383
GAAGAGA288100.016.704277
GCACCAA325950.016.451914
AAGAGAA302250.015.9295288
ACACACA287750.015.8224153
CGAAGGA238800.015.7537710
AACAGCA227150.015.7433413
CTGCCAC203700.015.5306824
CACATCA292900.015.4090136
GAACACA297600.015.3356871
GCGCCCG246200.015.2936642
TGGCGAA340450.015.2019398
CCTCAAA214800.015.1992569
ACACATC348450.015.0896835
TCCGATG375700.015.0346031
TGCAACC248500.015.0325963
GTAGCCC170350.015.0067513
CGCCACC212400.014.97222210
CGCCCTC138400.014.9501446
AAGCCGT234600.014.8823544
Produced by FastQC (version 0.11.5)