FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006128644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142675827
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTCCG190900.017.188585
GACCGAC275600.016.7594341
CCGGCGA211950.016.4364246
GAGGCCC250750.016.393623
ACAGCCC147850.016.36058
ACCCGGG300700.016.3189227
CCTCCGG201100.016.2620586
TGGAGCA283950.016.0264112
AGTCCGC322650.015.8940032
GCCATCG215950.015.8670981
AGAGCAA277450.015.8071725
GAGTCCG199550.015.622151
CGGCGGG250600.015.59577110
GCAACCG208000.015.5322114
GTCCGCT271400.015.4624183
AGGCGAC155150.015.2645836
CCCGCGC173550.015.2561222
GGCAACC227200.015.2266727
TCCGACC174550.015.1561164
ACGTCCC141400.015.053040510
Produced by FastQC (version 0.11.5)