FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006128652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95518864
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACAGCCC167850.018.8014878
GCCACGC177750.018.535683
GAGGCCC204150.018.4882183
CGGCCAC182850.018.0790651
GCCCTAC242300.017.9892028
CCCTGCC161800.017.9142076
CATCGCC166700.017.7734381
TGAACCG198650.017.6013183
GTCTCCA244400.017.5062377
TTCAGCC180450.017.470334
CGAGGCC212300.017.4358252
ATCGCCC169850.017.3205412
CCCGAGC211350.017.3198597
CCTACCG180500.017.31923910
GCTGACC170550.017.3175288
CCTCCAT255150.017.31583810
GGTCTCC248550.017.2580976
CCTAAGC255750.017.1806724
GAACCGG197400.017.1232814
CGAGCAG342750.017.102529
Produced by FastQC (version 0.11.5)