FastQCFastQC Report
Fri 22 Apr 2022
EGAF00006128676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences283364285
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTCGCC627250.019.3403957
CCGCACG762400.019.0775017
CAGGCGC657100.018.9966181
CACGACT864300.018.6175218
AACCACC528400.018.43896310
GGCCGCC447950.018.3720910
CGACCGC554600.018.2171543
TCGACCC443350.018.1788732
CGCGGTC750700.018.0815732
CCATCCC636600.018.0624564
ACCCAAC763500.018.0460264
CCCTCCG466550.017.9937535
ACAGCCA460150.017.9406742
GCAGACC531750.017.925766
GAGCATC672950.017.870841
GAACCAC545700.017.8705489
TGCGACC681350.017.8312972
CCGACCG424200.017.7289262
GCCCAGC1334700.017.7273672
TTGCCGC643050.017.6771451
Produced by FastQC (version 0.11.5)