FastQCFastQC Report
Tue 26 Apr 2022
EGAF00006128685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006128685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173639354
Sequences flagged as poor quality0
Sequence length120
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7622650.4389932250035899No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA3882760.2236105992423814Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1849520.10651502423811136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)