FastQCFastQC Report
Sat 11 May 2024
EGAF00006130761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006130761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26954328
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT320420.1188751580080201No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCG291930.10830542686873885No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCG271740.10081497858154727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)