FastQCFastQC Report
Wed 11 May 2022
EGAF00006130793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006130793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134133614
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATAACAATTCGTG3386640.2524825730856696No Hit
TCGAGCGGTATCCTTT2737720.2041039466811056No Hit
TTCAACTTCGCGATGC2487570.18545463182703778No Hit
GCAGATTTCGGTTGTA2384180.1777466459675052No Hit
GGGAACAGTTTCCTAT2383290.17768029421767462No Hit
TAGTCCCAGGTGATGC2255690.1681673916576944No Hit
GTCACCTGTTCGGGAA2168620.16167610305348218No Hit
TTACGTTGTAACGGCA2119120.15798575292245537No Hit
TGTACGATCGCTCGGA2035810.15177478182314538No Hit
TGTACGACAAGGAGGG1947260.14517315547764187No Hit
TAGCACACAGAACTTC1928180.1437506932453188No Hit
TAATTCCGTGGATTTC1906120.14210606447985513No Hit
CTCTCAGAGCGATACG1890650.14095273687324938No Hit
CAGTGCGAGGTACACG1855460.13832923341646486No Hit
TTAGCGATCTCCTTGG1850130.13793186844276037No Hit
TCAAGCAGTAGCAGGT1825650.13610682255977982No Hit
CCCGTTATCGGTCCGA1820140.1356960381310534No Hit
ATGTCTTCAACGGACA1794960.13381880547854322No Hit
TTCATTGGTGTACGCC1782980.13292566619430682No Hit
GCTTTCGGTAAGGTCG1734270.12929421256032061No Hit
CCCTCTCCACACATTG1714360.12780987172984096No Hit
GAATCTGGTGGACTGA1700150.12675048030838862No Hit
ATATTCCAGTGTTCCA1643810.122550190886529No Hit
ATGTTTCGTAAACGGC1621330.12087425005934754No Hit
ATGGATCTCCATAGGT1569910.11704075907475363No Hit
TGGGTTATCAGTTGAC1558540.11619309683253597No Hit
TTATGTCAGGCAAGCT1548960.11547888361525843No Hit
CATGTTTGTTTCCGGG1547880.11539836688512695No Hit
CCCTAACGTCTAAGAA1541810.1149458330407768No Hit
ATCCTCGGTCAGAGTG1533550.11433002916032665No Hit
TTAGCGAGTGGACAGT1529050.11399454278477876No Hit
CGGACCACACAGATGG1528510.11395428441971303No Hit
TCAAAGCTCGATGTGT1519900.11331238715449805No Hit
ATCCTCGCAACGCAAG1507360.11237749845463792No Hit
TCTAGTTCAAAGCATA1503370.1120800338683188No Hit
GCACCTTCACAAACAA1502750.11203381130102108No Hit
ACAAGCTGTCTGGGAA1501270.11192347355972977No Hit
GTACTTTAGTACCACT1499280.11177511402920971No Hit
ACAAAGAAGTTCGTTG1481760.11046895374040991No Hit
TCAGCTCGTAGCGTTT1480240.11035563389800263No Hit
CACCACTCAGGCATTT1473830.10987775219416664No Hit
TAATTCCGTGATCAGG1469310.10954077476806076No Hit
CCTATTAAGCCATGGA1461830.10898312185937224No Hit
TACCTCGTCAGTCACA1446180.10781637479774459No Hit
CCAGATAGTGAATACA1433920.10690236080569632No Hit
ATGCATGGTTACGAAA1433150.10684495535921369No Hit
AACTGGTCACATAAAG1432100.10676667520491917No Hit
TTCATCATCGGTTAGT1415590.10553581296929791No Hit
GGTGAAGTCGCGATGC1412010.1052689149194176No Hit
TAACGGTGTCGTAGTT1409780.10510266278220164No Hit
AGTTACGAGGATTAAC1400380.10440186901994604No Hit
GCTCAGGAGATACCAA1389130.10356315308107632No Hit
CCATACCCAAGCCTTA1385990.10332905814347178No Hit
GCGATTACAGAACGAC1378390.10276245893143533No Hit
TGGCGCACAAGGAAGA1360810.10145182549096159No Hit
CCACGTTTCTCCCTTT1358620.10128855545486161No Hit
CAGTATGGTAGAATAC1357090.10117449008717533No Hit
TTAGCGAGTAACGTAA1351770.10077787063874982No Hit
GCTGTTCCATCACAAC1350900.10071300993947721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)