FastQCFastQC Report
Sun 15 May 2022
EGAF00006130807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006130807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144726718
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGCCG4397617530.385664518420157No Hit
CCCACAGT3559294424.593208836532867No Hit
TATGATTC3488070524.10108201306686No Hit
ATGCTGAA2780274219.210510943805136No Hit
GTATGCCG3043130.21026732603720066Illumina Single End Adapter 1 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)