FastQCFastQC Report
Sun 15 May 2022
EGAF00006130817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006130817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences320354702
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCACTT11344402135.41200434760592No Hit
TGCGCAGC9990228631.184897670083206No Hit
ACAATTCA8199947825.596464633754618No Hit
GTGTGGAG176463295.508372091882078No Hit
GTGGGGAG15038440.4694309122392716No Hit
CATCACTA7687410.23996557415910816No Hit
GGGTGGAG6522170.20359214206258164No Hit
CCTCACTT3376470.10539785990092944No Hit
NATCACTT3211750.10025605929767187No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)