FastQCFastQC Report
Wed 11 May 2022
EGAF00006130818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006130818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142902363
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTCTT4562238831.925565849460448No Hit
ATGCCAAA4171646329.192283545374266No Hit
CCTTATCG3566320024.956340295086655No Hit
TGCAGGGC1779574212.453077490398112No Hit
GAAGTCTA2617190.18314532699504765No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)