FastQCFastQC Report
Wed 11 May 2022
EGAF00006130824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006130824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175200843
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGATAC5684389932.44499171730584No Hit
TTTACATG4053483623.13621059460313No Hit
GAATTCCA3992024022.78541547885132Illumina Small RNA Adapter 2 (100% over 8bp)
ACGCGGGT3667991520.935923807170266No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)