FastQCFastQC Report
Wed 11 May 2022
EGAF00006130842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006130842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135184397
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGAT3832000528.346470340064467No Hit
GTCGACTC3288355124.324960372460737No Hit
CCTTTAGA3158392623.363588328910474No Hit
TAGACTCG3028840122.40524917975556No Hit
GTCGACTA2018870.14934193921802974No Hit
TAGACTCA1481350.10957995396465763No Hit
CGACGGAT1395610.10323750602667554No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)