FastQCFastQC Report
Wed 11 May 2022
EGAF00006130849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006130849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135184397
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATAACAATTCGTG3426980.2535041081701167No Hit
TCGAGCGGTATCCTTT2762920.20438157519021963No Hit
TTCAACTTCGCGATGC2511330.18577069955787873No Hit
GCAGATTTCGGTTGTA2406270.17799909260238073No Hit
GGGAACAGTTTCCTAT2391580.1769124287324372No Hit
TAGTCCCAGGTGATGC2285900.16909495849583883No Hit
GTCACCTGTTCGGGAA2176430.1609971304602557No Hit
TTACGTTGTAACGGCA2144830.1586595825848156No Hit
TGTACGATCGCTCGGA2054670.15199017383640806No Hit
TGTACGACAAGGAGGG1959040.14491613259184047No Hit
TAGCACACAGAACTTC1948180.144112785442243No Hit
TAATTCCGTGGATTTC1912950.14150671545326343No Hit
CTCTCAGAGCGATACG1906870.14105695940634333No Hit
CAGTGCGAGGTACACG1872850.13854039678854357No Hit
TTAGCGATCTCCTTGG1867720.13816091512395473No Hit
CCCGTTATCGGTCCGA1837890.1359542995187529No Hit
TCAAGCAGTAGCAGGT1829820.13535733713410728No Hit
TTCATTGGTGTACGCC1820150.134642017895009No Hit
ATGTCTTCAACGGACA1809220.13383349263302924No Hit
GCTTTCGGTAAGGTCG1757290.1299920729757No Hit
CCCTCTCCACACATTG1720330.12725802963784347No Hit
GAATCTGGTGGACTGA1717550.12705238460323198No Hit
ATATTCCAGTGTTCCA1652170.12221602763816004No Hit
ATGTTTCGTAAACGGC1634190.12088599248624825No Hit
ATGGATCTCCATAGGT1570380.11616577318460798No Hit
CATGTTTGTTTCCGGG1568650.11603779983573104No Hit
TGGGTTATCAGTTGAC1568610.11603484091436973No Hit
CCCTAACGTCTAAGAA1557230.11519302778707516No Hit
TTATGTCAGGCAAGCT1554350.11497998544906037No Hit
ATCCTCGGTCAGAGTG1544880.11427946081676867No Hit
CGGACCACACAGATGG1534420.11350570288078438No Hit
TTAGCGAGTGGACAGT1533940.11347019582444859No Hit
TCAAAGCTCGATGTGT1531320.11327638647528236No Hit
TCTAGTTCAAAGCATA1519790.11242347739288286No Hit
GTACTTTAGTACCACT1517980.11228958620128326No Hit
ATCCTCGCAACGCAAG1517480.11225259968426682No Hit
GCACCTTCACAAACAA1516910.11221043505486807No Hit
ACAAGCTGTCTGGGAA1508320.11157500669252533No Hit
TCAGCTCGTAGCGTTT1500640.11100689379115254No Hit
CACCACTCAGGCATTT1493330.11046615091237194No Hit
ACAAAGAAGTTCGTTG1483510.10973973571816872No Hit
CCTATTAAGCCATGGA1483450.10973529733612675No Hit
TAATTCCGTGATCAGG1471490.10885057984909309No Hit
TACCTCGTCAGTCACA1463420.10825361746444748No Hit
CCAGATAGTGAATACA1454310.10757972312440763No Hit
AACTGGTCACATAAAG1444060.10682149952557025No Hit
ATGCATGGTTACGAAA1441890.10666097804171881No Hit
GGTGAAGTCGCGATGC1432330.10595379583636416No Hit
TTCATCATCGGTTAGT1429470.10574223295903003No Hit
TAACGGTGTCGTAGTT1422400.10521924360841733No Hit
AGTTACGAGGATTAAC1415980.10474433672992602No Hit
GCGATTACAGAACGAC1401830.10369761829836027No Hit
CCATACCCAAGCCTTA1393740.103099176453034No Hit
GCTCAGGAGATACCAA1389060.10275298265375996No Hit
GCTGTTCCATCACAAC1375300.10173511370546706No Hit
CCACGTTTCTCCCTTT1370850.1014059337040206No Hit
TGGCGCACAAGGAAGA1368830.10125650817527411No Hit
TTAGCGAGTAACGTAA1364730.10095321873573916No Hit
CAGTATGGTAGAATAC1356520.10034590012632894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)