FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006131247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006131247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences600012593
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGC1163950.014.1207951
AAGTCGG520000.011.23480794
CCGCGCC1606750.010.1239772
CGCGCCC1271850.09.2200343
CGCGATC729200.08.93335153
GCGCGAT728550.08.7735922
GGCGCGA853550.07.7695511
ACCGCAC1087050.07.44528771
TAAGTCG290050.06.773314594
CGCGCCT714650.06.6687193
CGCCCGG1957100.06.48648455
ACTGCGC1171750.06.47791771
ACCGTGC1306200.06.21773051
GCGCCCG1610650.06.19507654
GCGATCT1465350.06.0203364
CCGCACC1223500.05.55856132
AACGCGA178450.05.4256091
GACGCGA137000.05.24890471
ACGCGAG196200.05.2461772
Produced by FastQC (version 0.11.5)