FastQCFastQC Report
Wed 8 May 2024
EGAF00006131334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006131334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1888102
Total Bases285.1 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGAATCTGGCTTGGCGGAATATCTCTTTGACAAGCACACCCTGGGAGA23190.12282175433318751No Hit
CTCACTTCCTAGATGAGGAAGTGAAGCTTATCAAGAAGATGGGTGACCAC22220.11768432002084632No Hit
CCAACCTCCACAGGCTGGGTGGCCCGGAGGCTGGGCTGGGCGAGTATCTC22090.11699579789651193No Hit
GGTGAAAGCCATCAAAGAATTGGGTGACCACGTGACCAACTTGCGCAAGA21320.11291762839083905No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)