FastQCFastQC Report
Wed 8 May 2024
EGAF00006131378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006131378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1244569
Total Bases187.9 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCACTTCCTAGATGAGGAAGTGAAGCTTATCAAGAAGATGGGTGACCAC18090.145351523298427No Hit
CCAACCTCCACAGGCTGGGTGGCCCGGAGGCTGGGCTGGGCGAGTATCTC17750.14261965387214368No Hit
CCCGAATCTGGCTTGGCGGAATATCTCTTTGACAAGCACACCCTGGGAGA17500.14061092635281772No Hit
GGTGAAAGCCATCAAAGAATTGGGTGACCACGTGACCAACTTGCGCAAGA16970.13635242401184666No Hit
CCAACTTGCGCAAGATGGGAGCGCCCGAATCTGGCTTGGCGGAATATCTC14300.11489921410544535No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)