EGAF00006134988 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00006134988
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12464354
Sequences flagged as poor quality	0
Sequence length	2-151
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	41896	0.33612652528963793	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	28452	0.22826694427966343	No Hit
GGGGGTGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGGCGGCCG	24418	0.19590265167372495	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	20998	0.16846440657895306	No Hit
CCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGA	18700	0.15002783136615022	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG	15065	0.12086466735460176	No Hit
AGACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGT	13051	0.10470658968768057	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTCCGC	14435	48.508247	7
CAGTCCG	15440	45.388336	6
GTCCGCC	17490	40.62576	8
GACAGTC	14890	40.04014	4
TCCGCCC	17865	39.609627	9
ACAGTCC	15165	38.715042	5
GGACAGT	17295	35.20645	3
TACGGCG	4975	32.93821	7
CAAGTAC	22400	31.853546	7
TTTCCGA	22400	30.50382	7
CAACGTG	4115	30.270613	7
GCACCGT	4520	29.720345	1
TGTCGAG	3085	29.603271	9
GTTTCCG	21125	29.281078	6
AACGTGG	4280	29.24691	8
TCGCGGG	23550	29.182203	145
AGCCTCC	42225	28.99823	145
AGTACTA	25150	28.593134	9
AAGTACT	25365	28.489609	8
CCAACGT	3765	28.426043	6