FastQCFastQC Report
Wed 8 May 2024
EGAF00006135212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6192186
Total Bases878.6 Mbp
Sequences flagged as poor quality0
Sequence length2-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG156920.2534161603026783No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG144580.2334878183568775No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG130060.21003891032988997No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT67800.10949283500204934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)