FastQCFastQC Report
Wed 4 Jan 2023
EGAF00006135349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24745227
Sequences flagged as poor quality0
Sequence length32-97
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC951290.3844337334226111No Hit
CTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC493550.1994526055469202No Hit
TCTCGGAGGGGGACGGGCCGCTCGGCGGACGGACGGACGGAATCGCGCCG386170.15605837845011483No Hit
AGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC379960.15354880357331133No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCC375470.151734312237265No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA371770.15023907438796177No Hit
GTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGA340580.13763462343667326No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG323530.13074440577974894No Hit
ACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCCGGCGC279520.11295915773979362No Hit
GGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCG279200.11282983987174577No Hit
GGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGG263200.10636394646935346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)