FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34784928
Sequences flagged as poor quality0
Sequence length32-97
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC877510.2522673038161815No Hit
CTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC529690.1522757212549067No Hit
AGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGA459610.13212906463397023No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCC398170.11446624239095737No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA371720.10686237441687389No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)