FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41241780
Sequences flagged as poor quality0
Sequence length32-97
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC956390.23189833222523373No Hit
AGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGA905470.21955162943985443No Hit
CTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC519970.1260784573313761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)