FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29099571
Sequences flagged as poor quality0
Sequence length32-97
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC574810.19753212169347786No Hit
AGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGA538690.1851195675702573No Hit
CTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC370290.12724929862368073No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA358450.12318051011817321No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCC303030.10413555581283312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)