FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38204590
Sequences flagged as poor quality0
Sequence length32-97
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC736730.1928380856855158No Hit
AGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGA527530.13808026731866513No Hit
CTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC384050.10052457047700289No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)