FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36084822
Sequences flagged as poor quality0
Sequence length32-97
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAAT812250.22509463951353287No Hit
CGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTG479480.13287581133142348No Hit
AGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCAC432900.1199673369595671No Hit
TGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATC365290.1012309275074157No Hit
TGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAG362100.10034689931406617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)