FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38958728
Sequences flagged as poor quality0
Sequence length32-97
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC1303470.3345771453318496No Hit
GCAACACGCCCCCACCGCCGACGACGCGCGACGACGACGACGACGACGGG505790.12982713398651005No Hit
ACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCCGGCGC486420.12485520574491037No Hit
CTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC472530.12128989426964865No Hit
CTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCGCGCGGC452080.11604074958504805No Hit
AGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC430310.11045278480344635No Hit
GGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGG420490.10793216862727141No Hit
CACTCCCCCCACCCGCCAGCCGCTCCTCCTCGGGCCCGCAGAGGCGCCGA407020.10447466354651005No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG393780.1010761953008322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)