FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32744629
Sequences flagged as poor quality0
Sequence length32-97
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC1046970.3197379332042516No Hit
GCAACACGCCCCCACCGCCGACGACGCGCGACGACGACGACGACGACGGG419890.1282317170244928No Hit
ACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCCGGCGC413390.12624665865049195No Hit
CTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCGCGCGGC360850.11020127911664536No Hit
CTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC350820.10713818134876409No Hit
CACTCCCCCCACCCGCCAGCCGCTCCTCCTCGGGCCCGCAGAGGCGCCGA350420.10701602391036405No Hit
AGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC346530.10582804282192357No Hit
GGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGG339210.10359256169920263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)