FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32744629
Sequences flagged as poor quality0
Sequence length32-97
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAAT455300.13904570425885723No Hit
GTTTGAGTGAGACGAGACGAGACGCGCCCCTCCCACGCGGGGAAGGGCGC414800.12667726362085213No Hit
GCTCGGGCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTCCCTC353280.10788944959492441No Hit
CGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTG333420.1018243327783619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)