FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31124223
Sequences flagged as poor quality0
Sequence length32-97
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC779010.2502905855673891No Hit
TCTCGGAGGGGGACGGGCCGCTCGGCGGACGGACGGACGGAATCGCGCCG557590.17914985379715342No Hit
CTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCGCGCGGC421040.13527727262460496No Hit
GCAACACGCCCCCACCGCCGACGACGCGCGACGACGACGACGACGGGCAC413550.13287078684663067No Hit
CACTCCCCCCACCCGCCAGCCGCTCCTCCTCGGGCCCGCAGAGGCGCCGA345620.11104534240099745No Hit
ACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCCGGCGC322090.10348531431611963No Hit
CTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC322050.10347246258966851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)