FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42417202
Sequences flagged as poor quality0
Sequence length32-97
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC1438900.3392255811686966No Hit
AGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC600680.1416123581182936No Hit
CTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC507070.11954348143944055No Hit
GGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGG478500.11280800652527717No Hit
GCAACACGCCCCCACCGCCGACGACGCGCGACGACGACGACGACGGGCAC475920.11219976272833837No Hit
ACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCCGGCGC451460.1064332343279031No Hit
AGGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTGCGGGGTACCTCACC442070.10421950981113748No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG435540.10268004004601718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)