FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35190873
Sequences flagged as poor quality0
Sequence length32-97
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCGCCCCCGGGGGTGCCTCCGGGCTCCTCGGGGTGCGCGGCTGGGGGT646320.18366125784944295No Hit
GCTCGGGCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTCCCTC609460.17318695105972504No Hit
GCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAAT494690.1405733810582079No Hit
GCTCCTCGGGGTGCGCGGCTGGGGGTTCCCTCGCAGGGCCCGCCGGGGGC406440.11549585598515844No Hit
CGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTG375950.1068316776341411No Hit
GCTCCGCCGCCGCGTCCTCGGACCCGTCCCCCCGACCTCCGCGGGGGAGA359180.10206623745878654No Hit
GTTTGAGTGAGACGAGACGAGACGCGCCCCTCCCACGCGGGGAAGGGCGC356190.10121658533449851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)