FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59296418
Sequences flagged as poor quality0
Sequence length32-97
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC1668270.2813441445990886No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCC696840.11751805985987214No Hit
ACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCCGGCGC683560.11527846420672494No Hit
AGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGA678000.11434080217122053No Hit
AGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGA655810.11059858624175242No Hit
ATTTGGCGAGGGCGCTCCCGACGACGCACCGGGAGGAGGCCCTTCCTGGC638700.10771308310731349No Hit
AGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAG619880.10453919830368168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)