FastQCFastQC Report
Thu 1 Jun 2023
EGAF00006135505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48705051
Sequences flagged as poor quality0
Sequence length32-97
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC1038980.21332079089702627No Hit
ACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCCGGCGC645250.1324811260335196No Hit
ATTTGGCGAGGGCGCTCCCGACGACGCACCGGGAGGAGGCCCTTCCTGGC606880.12460309301390528No Hit
CTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCGCGCGGC595850.12233844083234817No Hit
CACTCCCCCCACCCGCCAGCCGCTCCTCCTCGGGCCCGCAGAGGCGCCGA545180.11193500238815067No Hit
TCTCGGAGGGGGACGGGCCGCTCGGCGGACGGACGGACGGAATCGCGCCG513800.10549213879275067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)