FastQCFastQC Report
Thu 1 Jun 2023
EGAF00006135506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48705051
Sequences flagged as poor quality0
Sequence length32-97
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCGCCCCCGGGGGTGCCTCCGGGCTCCTCGGGGTGCGCGGCTGGGGGT618890.12706895635937224No Hit
GCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAAT545540.11200891669326041No Hit
GCTCGGGCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTCCCTC511840.10508971646493093No Hit
GTTTGAGTGAGACGAGACGAGACGCGCCCCTCCCACGCGGGGAAGGGCGC489770.10055835892667478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)