FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53390740
Sequences flagged as poor quality0
Sequence length32-97
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC1308510.2450818250505612No Hit
ACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCCGGCGC830650.15557941320910704No Hit
ATTTGGCGAGGGCGCTCCCGACGACGCACCGGGAGGAGGCCCTTCCTGGC709480.13288446648239002No Hit
CTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCGCGCGGC671550.12578023829600415No Hit
CACTCCCCCCACCCGCCAGCCGCTCCTCCTCGGGCCCGCAGAGGCGCCGA603900.11310950176004304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)