FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53390740
Sequences flagged as poor quality0
Sequence length32-97
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGAGTGAGACGAGACGAGACGCGCCCCTCCCACGCGGGGAAGGGCGC662780.12413763135704806No Hit
GCTCGGGCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTCCCTC610040.11425951391570899No Hit
AATCGCCCCCGGGGGTGCCTCCGGGCTCCTCGGGGTGCGCGGCTGGGGGT600990.11256446342568019No Hit
GCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAAT591780.11083944519218127No Hit
GGAGGCGCTCTGCCTCGGAAGGAAGGAGGTGGGTGGACGGGGGGGCCTGG554950.10394124524215247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)