FastQCFastQC Report
Thu 1 Jun 2023
EGAF00006135521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48224903
Sequences flagged as poor quality0
Sequence length32-97
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC818540.16973388209821802No Hit
TCTCGGAGGGGGACGGGCCGCTCGGCGGACGGACGGACGGAATCGCGCCG725200.15037873689450448No Hit
CTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCGCGCGGC582770.12084420366796798No Hit
ATTTGGCGAGGGCGCTCCCGACGACGCACCGGGAGGAGGCCCTTCCTGGC533800.1106896990544491No Hit
ACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCCGGCGC482620.10007692498624622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)