FastQCFastQC Report
Thu 1 Jun 2023
EGAF00006135532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47345384
Sequences flagged as poor quality0
Sequence length32-97
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAAT725090.15314903771822824No Hit
GCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGC496230.10481064004043139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)