FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006135546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006135546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58284864
Sequences flagged as poor quality0
Sequence length32-97
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTCAACCCGGCGGCGGGTCCGGCCGTGTCGGCGGCCCGGCGGATCTTT1848150.3170891845951635No Hit
GCGAGACCCGTCGCCGCGCTCTCCCCCCTCCCGGCGCCCACCCCCGCGGG812050.13932433641777048No Hit
GGCCGAGGGAGCGAGACCCGTCGCCGCGCTCTCCCCCCTCCCGGCGCCCA719870.12350890962017172No Hit
GCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAAT695070.11925394558697092No Hit
TCGCCGCGCTCTCCCCCCTCCCGGCGCCCACCCCCGCGGGGAATCCCCCG682570.1171093064573334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)