FastQCFastQC Report
Wed 8 May 2024
EGAF00006138372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23559936
Total Bases188.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGGCTC758305732.186237687572664No Hit
CGTCCTAG677330728.749258911399423No Hit
GAGTTAGT502703021.337197180841237No Hit
TTAAAGCA394603016.748899487672634No Hit
ACCGGCTA273360.11602747987091307No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)