FastQCFastQC Report
Wed 8 May 2024
EGAF00006138373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30261054
Total Bases242 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGTC1021012433.74014665847396No Hit
GAAACCCT968539232.006129066092676No Hit
AGCGAAAG960196631.730441378545503No Hit
CCGTGTGA2917390.9640741528698902No Hit
GAAACCCA575140.1900594738041841No Hit
AGCGACAG358820.11857485201936457No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)