FastQCFastQC Report
Wed 8 May 2024
EGAF00006138374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28150641
Total Bases225.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCTGCC803444728.540902496678495No Hit
TGATGCAT741274926.332434135336385No Hit
GCTACTGA642815522.83484415150618No Hit
ATGGAATG601137621.3543130332272No Hit
GCTACTAA293120.10412551529466062No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)