FastQCFastQC Report
Wed 8 May 2024
EGAF00006138375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29796078
Total Bases774.6 Mbp
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACTTTTACTTCCTCTAGATAGTCA563030.1889611109220482No Hit
GTCTCGTTCGTTATCGGAATTAACCA415660.13950158138262359No Hit
TTTCCTCTAGATAGTCAAGTTCGACC361720.12139852768542221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)